Previously VEP was available as part of the ensembl-tools package (see the Ensembl archive site for documentation). Users without the git utility installed may download a zip file from GitHub, though we would always recommend using git if possible. To use an older version (this example shows how to set up release 87): cd ensembl-vep To update from a previous version: cd ensembl-vep Use git to download the ensembl-vep package: git clone Variant Effect Predictor Download and install DownloadÄownload ensembl-vep package (see below the different ways to download it) and then follow the installation instructions.
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